MODSIM
Modelling and Simulation of Biosystems
by
Michiel Stock
,
Bram Spanoghe
,
Daniel Illana González
,
Gauthier Vanhaelewyn
,
Daan Van Hauwermeiren
Welcome
Class logistics
Software installation
Errata
Cheat Sheets
Overview
Intro to Julia
Catalyst
Turing Cheat Sheet
Exercises
Introduction
1. ODE catalyst intro
1. ODE infection
1. ODE birth rate
1. ODE irrigation
EXTRA. ODE fermentor first order
EXTRA. ODE fermentor monod
EXTRA. ODE soil
EXTRA. ODE water evaporation
EXTRA. ODE anaerobic fermentation
2. SDE catalyst intro
2. SDE aging
2. SDE fermentor 2nd order
2. SSA catalyst intro
2. SSA foxes rabbits
3. ProbMod intro
3. ProbMod basics
3. ProbMod advanced
3. ProbMod review
4. MCMC intro
4. MCMC basics
4. MCMCM advanced
4. MCMC review
5. Calibration intro
5. Calibration fermenter monod
5. Calibration irrigation
5. Optimisation wastewater treatment
6. Sensitivity intro
6. Sensitivity fermenter monod
6. Sensitivity bitrophic model
6. Sensitivity insuline
6. Uncertainty intro
6. Uncertainty fermenter monod
6. Uncertainty bithropic model
7. Model selection intro
7. Probability selection
Project
Introduction
template (EN)
template (NL)
example antibiotics
example estrogen
example ladybugs
2nd semester '24-'25
I002445
5. Calibration intro
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Website based on the MIT course
Computational Thinking
, a live online Julia/Pluto textbook
and built with
Pluto.jl
and the
Julia programming language
.